Introduction to package use | Quick working example | Alternative to taxonomical grouping: fuzzy traits
Package: hellometry 1.0.1
hellometry: Biomass Estimation from Allometric Relationships
Estimates body size and biomass of organisms from values supplied by the user with any data that follow a few column-naming conventions. Comes with a dataset of measurements from bromeliad invertebrates to improve the quality of estimation.
Authors:
hellometry_1.0.1.tar.gz
hellometry_1.0.1.zip(r-4.7-any)hellometry_1.0.1.zip(r-4.6-any)hellometry_1.0.1.zip(r-4.5-any)
hellometry_1.0.1.tgz(r-4.6-any)hellometry_1.0.1.tgz(r-4.5-any)
hellometry_1.0.1.tar.gz(r-4.6-any)hellometry_1.0.1.tar.gz(r-4.7-any)
hellometry_1.0.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
hellometry/json (API)
| # Install 'hellometry' in R: |
| install.packages('hellometry', repos = c('https://pierrerogy.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/pierrerogy/hellometry/issues
Last updated from:58ee3a8969. Checks:7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | NOTE | 115 | ||
| source / vignettes | OK | 169 | ||
| linux-release | NOTE | 113 | ||
| macos-release | NOTE | 110 | ||
| macos-oldrel | NOTE | 107 | ||
| windows-devel | NOTE | 87 | ||
| windows-release | NOTE | 78 | ||
| windows-oldrel | NOTE | 74 | ||
| wasm-release | OK | 99 |
Exports:%>%%notin%bromeliad_inverts_measurementscombine_measurementsdata_checkerdry_wetfull_estimation_tablehellometrymake_measurement_tablemake_trait_tablematcher_of_traitspredict_biomassr_squaredtrini_communities
Dependencies:bayestestRclicpp11crayondatawizarddplyrgenericsgluehmsinsightlifecyclemagrittrperformancepillarpkgconfigprettyunitsprogresspurrrR6rlangstringistringrtibbletidyrtidyselectutf8vctrswithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Not In Operator | %notin% |
| Read the 'bromeliad_inverts_measurements' dataset | bromeliad_inverts_measurements |
| Combine data with reference measurements | combine_measurements |
| Set of checks to perform on the data to make sure it can be handled by 'hellometry()' | data_checker |
| Parsing dry and wet measurements | dry_wet |
| Returns size and biomass estimates for every taxon in measurement table | full_estimation_table |
| Wrapper function to estimate size (mm) and biomass (mg) from an input dataset | hellometry |
| Build measurement table to be used for biomass estimations | make_measurement_table |
| Prepare data to do estimation with traits in 'full_estimation_table' | make_trait_table |
| Finds which species have matching traits | matcher_of_traits |
| Estimate biomass from a fitted allometric model | predict_biomass |
| Get the R2 of a fitted allometric model | r_squared |
| Read the 'trini_communities' dataset | trini_communities |